If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 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'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 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=> 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ), 'gf_id' => 'HOM05D000571', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000571' ), 'data_identifier' => 'HOM05D000571', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000571', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '969', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15980' => 'bna', 'A02p34900' => 'bna', 'A03p27630' => 'bna', 'A04p14110' => 'bna', 'A04p31310' => 'bna', 'A05p02000' => 'bna', 'A06p18930' => 'bna', 'A06p27850' => 'bna', 'A06p41620' => 'bna', 'A07p20650' => 'bna', 'A08p21420' => 'bna', 'A09p03160' => 'bna', 'A09p15040' => 'bna', 'A09p15050' => 'bna', 'A09p49800' => 'bna', 'Aa31LG10G11780' => 'aar', 'Aa31LG10G11790' => 'aar', 'Aa31LG10G11800' => 'aar', 'Aa31LG11G5890' => 'aar', 'Aa31LG2G5650' => 'aar', 'Aa31LG3G1030' => 'aar', 'Aa31LG3G1040' => 'aar', 'Aa31LG4G17310' => 'aar', 'Aa31LG9G770' => 'aar', 'Aa31sc47G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.683' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3652' => 'aag', 'Actinidia00884' => 'ach', 'Actinidia04753' => 'ach', 'Actinidia05875' => 'ach', 'Actinidia09589' => 'ach', 'Actinidia09840' => 'ach', 'Actinidia17777' => 'ach', 'Actinidia25545' => 'ach', 'Actinidia28435' => 'ach', 'Actinidia29545' => 'ach', 'Actinidia33990' => 'ach', 'Actinidia38205' => 'ach', 'Actinidia38206' => 'ach', 'Ah.02g119290' => 'amhyb', 'Ah.02g119310' => 'amhyb', 'Ah.02g123780' => 'amhyb', 'Ah.02g123790' => 'amhyb', 'Ah.04g150200' => 'amhyb', 'Ah.04g150210' => 'amhyb', 'Ah.05g168120' => 'amhyb', 'Ah.13g077390' => 'amhyb', 'AL4G38960' => 'aly', 'AL5G15960' => 'aly', 'AL5G28260' => 'aly', 'AL5G38320' => 'aly', 'AL5G38360' => 'aly', 'AL6G14850' => 'aly', 'AL7G28570' => 'aly', 'AL7G48490' => 'aly', 'AL8G24020' => 'aly', 'Aqoxy1G00106' => 'aox', 'Aqoxy1G02135' => 'aox', 'Aqoxy3G01689' => 'aox', 'Aqoxy4G00305' => 'aox', 'Aqoxy5G02044' => 'aox', 'Aqoxy5G03004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09XT1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11JIMN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1LU1XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37DX2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3WTG0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42U6AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI1NUG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D34J8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5LDHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5GQMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU830T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N2WVM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9M04D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SLD6BY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX7U7K' => 'arhy', 'AT2G40990' => 'ath', 'AT3G26935' => 'ath', 'AT3G48760' => 'ath', 'AT3G56920' => 'ath', 'AT3G56930' => 'ath', 'AT4G24630' => 'ath', 'AT5G05070' => 'ath', 'AT5G41060' => 'ath', 'AT5G50020' => 'ath', 'ATR0582G071' => 'atr', 'ATR0582G137' => 'atr', 'ATR0584G255' => 'atr', 'ATR0661G575' => 'atr', 'ATR0794G048' => 'atr', 'ATR1096G155' => 'atr', 'Atru.chr1.1537' => 'acertr', 'Atru.chr1.1538' => 'acertr', 'Atru.chr12.1459' => 'acertr', 'Atru.chr13.2057' => 'acertr', 'Atru.chr4.710' => 'acertr', 'Atru.chr6.1878' => 'acertr', 'Atru.chr6.2615' => 'acertr', 'AUR62003392' => 'cqu', 'AUR62003641' => 'cqu', 'AUR62017951' => 'cqu', 'AUR62018441' => 'cqu', 'AUR62018442' => 'cqu', 'AUR62020991' => 'cqu', 'AUR62020992' => 'cqu', 'AUR62026674' => 'cqu', 'AUR62029435' => 'cqu', 'AUR62040581' => 'cqu', 'BcaB01g00781' => 'bca', 'BcaB01g02925' => 'bca', 'BcaB02g07635' => 'bca', 'BcaB02g07914' => 'bca', 'BcaB02g10620' => 'bca', 'BcaB03g12438' => 'bca', 'BcaB04g19415' => 'bca', 'BcaB06g27590' => 'bca', 'BcaB07g30200' => 'bca', 'BcaC01g02369' => 'bca', 'BcaC01g04835' => 'bca', 'BcaC02g07379' => 'bca', 'BcaC02g12745' => 'bca', 'BcaC02g12864' => 'bca', 'BcaC02g12866' => 'bca', 'BcaC02g12867' => 'bca', 'BcaC02g12872' => 'bca', 'BcaC03g17406' => 'bca', 'BcaC06g31034' => 'bca', 'BcaC07g38164' => 'bca', 'BcaC07g39359' => 'bca', 'BcaC07g40005' => 'bca', 'BcaC07g40006' => 'bca', 'BcaC07g40106' => 'bca', 'BcaC07g40107' => 'bca', 'BcaC08g44505' => 'bca', 'BcaC09g50846' => 'bca', 'BcaNung04958' => 'bca', 'BolC1t01924H' => 'bol', 'BolC2t11425H' => 'bol', 'BolC3t15655H' => 'bol', 'BolC3t18871H' => 'bol', 'BolC4t21884H' => 'bol', 'BolC4t26405H' => 'bol', 'BolC4t28376H' => 'bol', 'BolC6t37150H' => 'bol', 'BolC6t37552H' => 'bol', 'BolC7t44118H' => 'bol', 'BolC8t48581H' => 'bol', 'BolC8t50005H' => 'bol', 'BolC8t50835H' => 'bol', 'BolC8t50836H' => 'bol', 'BolC9t53259H' => 'bol', 'BolC9t59923H' => 'bol', 'BraA01t01532Z' => 'bra', 'BraA02t08497Z' => 'bra', 'BraA03t11975Z' => 'bra', 'BraA04t17072Z' => 'bra', 'BraA04t18588Z' => 'bra', 'BraA05t19196Z' => 'bra', 'BraA06t24975Z' => 'bra', 'BraA06t25725Z' => 'bra', 'BraA06t27087Z' => 'bra', 'BraA07t28209Z' => 'bra', 'BraA07t29754Z' => 'bra', 'BraA07t29755Z' => 'bra', 'BraA07t29974Z' => 'bra', 'BraA08t34091Z' => 'bra', 'BraA09t35955Z' => 'bra', 'BraA09t37149Z' => 'bra', 'BraA09t40433Z' => 'bra', 'BraA10t45155Z' => 'bra', 'C01p19960' => 'bna', 'C02p53580' => 'bna', 'C03p33330' => 'bna', 'C03p66060' => 'bna', 'C04p02380' => 'bna', 'C04p48150' => 'bna', 'C04p68710' => 'bna', 'C06p19570' => 'bna', 'C07p36030' => 'bna', 'C08p23790' => 'bna', 'C08p32180' => 'bna', 'C08p32200' => 'bna', 'C09p03380' => 'bna', 'C09p72000' => 'bna', 'CAN.G264.23' => 'can', 'CAN.G452.10' => 'can', 'CAN.G473.135' => 'can', 'CAN.G624.8' => 'can', 'CAN.G65.112' => 'can', 'CAN.G758.12' => 'can', 'CAN.G787.29' => 'can', 'CAN.G959.35' => 'can', 'CAN.G959.36' => 'can', 'CANSAT01G0971' => 'cansat', 'CANSAT25G3353' => 'cansat', 'CANSAT64G0804' => 'cansat', 'CANSAT64G2610' => 'cansat', 'CANSAT78G1755' => 'cansat', 'CANSAT78G2152' => 'cansat', 'CANSAT80G1544' => 'cansat', 'CARHR136100' => 'chi', 'CARHR148090' => 'chi', 'CARHR157520' => 'chi', 'CARHR167070' => 'chi', 'CARHR167080' => 'chi', 'CARHR208200' => 'chi', 'CARHR213310' => 'chi', 'CARHR232020' => 'chi', 'CARHR258640' => 'chi', 'Carub.0004s2331' => 'cru', 'Carub.0005s0509' => 'cru', 'Carub.0005s1493' => 'cru', 'Carub.0005s2366' => 'cru', 'Carub.0005s2367' => 'cru', 'Carub.0006s0400' => 'cru', 'Carub.0007s1643' => 'cru', 'Carub.0007s3443' => 'cru', 'Carub.0008s0993' => 'cru', 'Ca_04514_v3' => 'car', 'Ca_08113_v3' => 'car', 'Ca_08345_v3' => 'car', 'Ca_08346_v3' => 'car', 'Ca_10672_v3' => 'car', 'Ca_16069_v3' => 'car', 'Ca_16584_v3' => 'car', 'CBR_g34598' => 'cbr', 'CBR_g34654' => 'cbr', 'CBR_g40784' => 'cbr', 'Cc04_g09820' => 'ccan', 'Cc05_g04420' => 'ccan', 'Cc05_g04480' => 'ccan', 'Cc05_g04540' => 'ccan', 'Cc05_g04570' => 'ccan', 'Cc06_g22750' => 'ccan', 'Cc06_g22760' => 'ccan', 'Cc07_g01080' => 'ccan', 'Cc07_g16700' => 'ccan', 'Cc10_g15110' => 'ccan', 'CDE01G0321' => 'cde', 'CDE02G0243' => 'cde', 'CDE02G2015' => 'cde', 'CDE02G2576' => 'cde', 'CDE02G3650' => 'cde', 'CDE02G4192' => 'cde', 'CDE02G4556' => 'cde', 'CDE05G3245' => 'cde', 'CDE05G3518' => 'cde', 'CDE06G0161' => 'cde', 'CDE06G0407' => 'cde', 'CDE06G1307' => 'cde', 'CDE06G1342' => 'cde', 'CDE08G0950' => 'cde', 'CDE08G1530' => 'cde', 'CDE12G0101' => 'cde', 'Cfa007196' => 'cfa', 'Cfa009468' => 'cfa', 'Cfa014398' => 'cfa', 'Cfa018295' => 'cfa', 'Cfa019921' => 'cfa', 'Cfa019924' => 'cfa', 'Cfa023290' => 'cfa', 'Cfa024056' => 'cfa', 'Ciclev10001285m.g' => 'ccl', 'Ciclev10005034m.g' => 'ccl', 'Ciclev10011689m.g' => 'ccl', 'Ciclev10013374m.g' => 'ccl', 'Ciclev10015257m.g' => 'ccl', 'Ciclev10017708m.g' => 'ccl', 'Ciclev10027028m.g' => 'ccl', 'Ciclev10031377m.g' => 'ccl', 'CiPaw.03G004600' => 'cil', 'CiPaw.04G003200' => 'cil', 'CiPaw.04G116000' => 'cil', 'CiPaw.05G098800' => 'cil', 'CiPaw.06G111000' => 'cil', 'CiPaw.09G162500' => 'cil', 'CiPaw.10G122700' => 'cil', 'CiPaw.10G123200' => 'cil', 'CiPaw.15G013900' => 'cil', 'CiPaw.16G009400' => 'cil', 'ClCG04G004920' => 'cla', 'ClCG05G013870' => 'cla', 'ClCG08G002670' => 'cla', 'ClCG08G007110' => 'cla', 'ClCG10G016550' => 'cla', 'COL.COLO4_00154' => 'col', 'COL.COLO4_08537' => 'col', 'COL.COLO4_13312' => 'col', 'COL.COLO4_13803' => 'col', 'COL.COLO4_16661' => 'col', 'COL.COLO4_22371' => 'col', 'COL.COLO4_27448' => 'col', 'COL.COLO4_27728' => 'col', 'Cpa.g.sc38.62' => 'cpa', 'Cpa.g.sc4.139' => 'cpa', 'Cpa.g.sc4.140' => 'cpa', 'Cpa.g.sc49.89' => 'cpa', 'Cpa.g.sc70.107' => 'cpa', 'Cpa.g.sc70.108' => 'cpa', 'Cpa.g.sc72.49' => 'cpa', 'Cpa.g.sc92.58' => 'cpa', 'Cpa.g.sc92.59' => 'cpa', 'Cre01.g007200' => 'cre', 'Cre01.g035200' => 'cre', 'Cre12.g542550' => 'cre', 'CsaV3_3G026790' => 'csa', 'CsaV3_3G039790' => 'csa', 'CsaV3_4G031730' => 'csa', 'CsaV3_6G002800' => 'csa', 'CsaV3_6G005090' => 'csa', 'CSS0004359' => 'camsi', 'CSS0012538' => 'camsi', 'CSS0016654' => 'camsi', 'CSS0019734' => 'camsi', 'CSS0021476' => 'camsi', 'CSS0026604' => 'camsi', 'CSS0030999' => 'camsi', 'CSS0037133' => 'camsi', 'CSS0047694' => 'camsi', 'DCAR_007511' => 'dca', 'DCAR_009094' => 'dca', 'DCAR_009095' => 'dca', 'DCAR_013512' => 'dca', 'DCAR_014447' => 'dca', 'DCAR_016363' => 'dca', 'DCAR_016945' => 'dca', 'DCAR_021420' => 'dca', 'DCAR_021810' => 'dca', 'Dinv05429' => 'din', 'Dinv05776' => 'din', 'Dinv06942' => 'din', 'Dinv11632' => 'din', 'Dinv11633' => 'din', 'Dinv23189' => 'din', 'Dinv25636' => 'din', 'Dinv25887' => 'din', 'Dinv33307' => 'din', 'Dinv41050' => 'din', 'Duzib041G0654' => 'dzi', 'Duzib084G0157' => 'dzi', 'Duzib093G1582' => 'dzi', 'Duzib093G1734' => 'dzi', 'Duzib093G2044' => 'dzi', 'Duzib106G0818' => 'dzi', 'Duzib116G0468' => 'dzi', 'Duzib128G1125' => 'dzi', 'Duzib132G1011' => 'dzi', 'Duzib147G0273' => 'dzi', 'Duzib187G0433' => 'dzi', 'Duzib187G1016' => 'dzi', 'Duzib205G1744' => 'dzi', 'Duzib248G1133' => 'dzi', 'Duzib251G0503' => 'dzi', 'Duzib264G0104' => 'dzi', 'Duzib264G0501' => 'dzi', 'ECA232G3203' => 'eca', 'ECA236G1093' => 'eca', 'ECA236G3034' => 'eca', 'ECA246G0287' => 'eca', 'ECA246G1252' => 'eca', 'ECA246G4007' => 'eca', 'ECA246G4582' => 'eca', 'ECA247G4100' => 'eca', 'EL10Ac1g01589' => 'bvu', 'EL10Ac3g07348' => 'bvu', 'EL10Ac6g15233' => 'bvu', 'EL10Ac6g15453' => 'bvu', 'Eucgr.B03567' => 'egr', 'Eucgr.F04202' => 'egr', 'Eucgr.I01621' => 'egr', 'Eucgr.K01692' => 'egr', 'Eucgr.K01693' => 'egr', 'Eucgr.K02669' => 'egr', 'FAN02G3875' => 'fan', 'FAN04G1814' => 'fan', 'FAN05G3921' => 'fan', 'FAN05G5542' => 'fan', 'FAN07G0881' => 'fan', 'FAN08G2123' => 'fan', 'FAN09G3567' => 'fan', 'FAN12G0452' => 'fan', 'FAN12G2259' => 'fan', 'FAN13G2521' => 'fan', 'FAN14G0818' => 'fan', 'FAN15G3192' => 'fan', 'FAN17G2623' => 'fan', 'FAN18G0617' => 'fan', 'FAN19G0090' => 'fan', 'FAN19G0619' => 'fan', 'FAN19G1127' => 'fan', 'FAN20G0814' => 'fan', 'FAN23G1038' => 'fan', 'FAN23G2460' => 'fan', 'FAN24G1598' => 'fan', 'FAN26G1342' => 'fan', 'FAN26G3232' => 'fan', 'FAN27G2729' => 'fan', 'FAN28G0026' => 'fan', 'FAN28G1875' => 'fan', 'FvH4_1g28800' => 'fve', 'FvH4_1g29200' => 'fve', 'FvH4_2g13200' => 'fve', 'FvH4_4g22230' => 'fve', 'FvH4_5g08980' => 'fve', 'FvH4_6g53970' => 'fve', 'Glyma.02G064800' => 'gma', 'Glyma.02G079900' => 'gma', 'Glyma.03G119700' => 'gma', 'Glyma.03G119800' => 'gma', 'Glyma.04G198700' => 'gma', 'Glyma.05G202500' => 'gma', 'Glyma.06G166700' => 'gma', 'Glyma.08G009800' => 'gma', 'Glyma.10G222900' => 'gma', 'Glyma.16G052300' => 'gma', 'Glyma.16G145900' => 'gma', 'Glyma.16G164500' => 'gma', 'Glyma.19G099000' => 'gma', 'Glyma.19G123900' => 'gma', 'Glyma.19G124000' => 'gma', 'Glyma.20G168800' => 'gma', 'Gohir.A01G193000' => 'ghi', 'Gohir.A02G063200' => 'ghi', 'Gohir.A02G105900' => 'ghi', 'Gohir.A02G106000' => 'ghi', 'Gohir.A04G102100' => 'ghi', 'Gohir.A05G270966' => 'ghi', 'Gohir.A09G032900' => 'ghi', 'Gohir.A09G038500' => 'ghi', 'Gohir.A11G223800' => 'ghi', 'Gohir.A12G192400' => 'ghi', 'Gohir.A13G094545' => 'ghi', 'Gohir.D01G183300' => 'ghi', 'Gohir.D02G068900' => 'ghi', 'Gohir.D03G072501' => 'ghi', 'Gohir.D03G072700' => 'ghi', 'Gohir.D04G141200' => 'ghi', 'Gohir.D05G272900' => 'ghi', 'Gohir.D09G032900' => 'ghi', 'Gohir.D09G039600' => 'ghi', 'Gohir.D11G226700' => 'ghi', 'Gohir.D12G194500' => 'ghi', 'Gohir.D13G088650' => 'ghi', 'Gorai.002G150100' => 'gra', 'Gorai.002G226400' => 'gra', 'Gorai.003G087100' => 'gra', 'Gorai.003G087200' => 'gra', 'Gorai.005G077800' => 'gra', 'Gorai.006G037900' => 'gra', 'Gorai.006G044900' => 'gra', 'Gorai.008G209200' => 'gra', 'Gorai.009G286000' => 'gra', 'Gorai.012G126300' => 'gra', 'Gorai.013G101300' => 'gra', 'GSVIVG01001117001' => 'vvi', 'GSVIVG01008599001' => 'vvi', 'GSVIVG01022275001' => 'vvi', 'GSVIVG01025842001' => 'vvi', 'GSVIVG01025843001' => 'vvi', 'GSVIVG01030426001' => 'vvi', 'GSVIVG01033036001' => 'vvi', 'GSVIVG01034567001' => 'vvi', 'HanXRQChr04g0125541' => 'han', 'HanXRQChr05g0155661' => 'han', 'HanXRQChr05g0162341' => 'han', 'HanXRQChr06g0175401' => 'han', 'HanXRQChr06g0178151' => 'han', 'HanXRQChr09g0273711' => 'han', 'HanXRQChr10g0278601' => 'han', 'HanXRQChr10g0291931' => 'han', 'HanXRQChr15g0474791' => 'han', 'HanXRQChr16g0498761' => 'han', 'HanXRQChr17g0551601' => 'han', 'Haze_11777' => 'cav', 'Haze_12525' => 'cav', 'Haze_12861' => 'cav', 'Haze_14912' => 'cav', 'Haze_17778' => 'cav', 'Haze_20310' => 'cav', 'Haze_20312' => 'cav', 'Haze_26157' => 'cav', 'Hma1.2p1_0081F.1_g042460' => 'hma', 'Hma1.2p1_0081F.1_g042490' => 'hma', 'Hma1.2p1_0328F.1_g126950' => 'hma', 'Hma1.2p1_0738F.1_g210910' => 'hma', 'Hma1.2p1_1167F.1_g263030' => 'hma', 'Hma1.2p1_2193F.1_g316770' => 'hma', 'HPP92_006439' => 'vpl', 'HPP92_006984' => 'vpl', 'HPP92_012449' => 'vpl', 'HPP92_016143' => 'vpl', 'HPP92_018211' => 'vpl', 'HPP92_019135' => 'vpl', 'HPP92_023042' => 'vpl', 'HPP92_025288' => 'vpl', 'HPP92_025307' => 'vpl', 'Hund03508' => 'sun', 'Hund04260' => 'sun', 'Hund12830' => 'sun', 'Hund17467' => 'sun', 'Hund19055' => 'sun', 'Hund19056' => 'sun', 'Hund24510' => 'sun', 'Hund24511' => 'sun', 'Lalb_Chr01g0009761' => 'lal', 'Lalb_Chr02g0156761' => 'lal', 'Lalb_Chr03g0035471' => 'lal', 'Lalb_Chr06g0173731' => 'lal', 'Lalb_Chr07g0183641' => 'lal', 'Lalb_Chr07g0183651' => 'lal', 'Lalb_Chr13g0297121' => 'lal', 'Lalb_Chr14g0365311' => 'lal', 'Lalb_Chr14g0365321' => 'lal', 'Lalb_Chr22g0358021' => 'lal', 'Lalb_Chr22g0358051' => 'lal', 'Lalb_Chr22g0358061' => 'lal', 'Lalb_Chr22g0360171' => 'lal', 'Lalb_Chr23g0272981' => 'lal', 'Lalb_Chr24g0400641' => 'lal', 'Lalb_Chr24g0400661' => 'lal', 'Lj1A1078G64' => 'lonja', 'Lj1C1078G9' => 'lonja', 'Lj1g0009079' => 'lja', 'Lj1g0017896' => 'lja', 'Lj1g0025082' => 'lja', 'Lj2A569T66' => 'lonja', 'Lj2g0004854' => 'lja', 'Lj2g0017673' => 'lja', 'Lj3g0016041' => 'lja', 'Lj4C702G7' => 'lonja', 'Lj4g0023410' => 'lja', 'Lj5g0008681' => 'lja', 'Lj6A839T32' => 'lonja', 'Lj6A839T33' => 'lonja', 'Lj7A613T65' => 'lonja', 'Lj7C378G2' => 'lonja', 'Lj7C378G3' => 'lonja', 'Lj9A483T59' => 'lonja', 'Lsat_1_v5_gn_0_23901' => 'lsa', 'Lsat_1_v5_gn_1_5740' => 'lsa', 'Lsat_1_v5_gn_3_33101' => 'lsa', 'Lsat_1_v5_gn_4_83340' => 'lsa', 'Lsat_1_v5_gn_5_11461' => 'lsa', 'Lsat_1_v5_gn_6_101701' => 'lsa', 'Lsat_1_v5_gn_8_83761' => 'lsa', 'Lsat_1_v5_gn_8_83780' => 'lsa', 'Lsat_1_v5_gn_9_30340' => 'lsa', 'Lsat_1_v5_gn_9_42001' => 'lsa', 'Manes.02G182400' => 'mes', 'Manes.02G207151' => 'mes', 'Manes.04G079010' => 'mes', 'Manes.04G080603' => 'mes', 'Manes.04G085800' => 'mes', 'Manes.04G087400' => 'mes', 'Manes.06G123700' => 'mes', 'Manes.08G066800' => 'mes', 'Manes.09G073700' => 'mes', 'Manes.09G172800' => 'mes', 'Manes.11G080816' => 'mes', 'Manes.12G145800' => 'mes', 'Manes.13G069900' => 'mes', 'Manes.14G047500' => 'mes', 'Manes.18G094000' => 'mes', 'Mapoly0027s0090' => 'mpo', 'MBI07_g02011_MAGBIO' => 'mbi', 'MBI07_g02013_MAGBIO' => 'mbi', 'MBI07_g42007_MAGBIO' => 'mbi', 'MBI07_g44822_MAGBIO' => 'mbi', 'MBI07_g47873_MAGBIO' => 'mbi', 'MBI09_g27006_MAGBIO' => 'mbi', 'MBI11_g03701_MAGBIO' => 'mbi', 'MBI13_g30267_MAGBIO' => 'mbi', 'MBI19_g25010_MAGBIO' => 'mbi', 'MCO01G051' => 'mco', 'MCO05G044' => 'mco', 'MCO11G403' => 'mco', 'MCO12G089' => 'mco', 'MCO13G476' => 'mco', 'MD00G1068100' => 'mdo', 'MD00G1107600' => 'mdo', 'MD00G1118200' => 'mdo', 'MD06G1135900' => 'mdo', 'MD09G1006700' => 'mdo', 'MD10G1032800' => 'mdo', 'MD13G1133700' => 'mdo', 'MD14G1100600' => 'mdo', 'MD14G1151100' => 'mdo', 'MD16G1144100' => 'mdo', 'MD17G1010600' => 'mdo', 'Medtr1g098390' => 'mtr', 'Medtr3g098840' => 'mtr', 'Medtr6g033315' => 'mtr', 'Medtr6g038020' => 'mtr', 'Medtr7g083480' => 'mtr', 'Medtr7g088350' => 'mtr', 'Medtr7g088360' => 'mtr', 'MELO3C008330.2' => 'cme', 'MELO3C009720.2' => 'cme', 'MELO3C014916.2' => 'cme', 'MELO3C024986.2' => 'cme', 'MELO3C026803.2' => 'cme', 'Migut.C00967' => 'egut', 'Migut.D01294' => 'egut', 'Migut.F00034' => 'egut', 'Migut.H02458' => 'egut', 'Migut.J01564' => 'egut', 'Migut.J01565' => 'egut', 'Migut.K00172' => 'egut', 'Migut.K00173' => 'egut', 'Migut.K01131' => 'egut', 'MSTRG.1102' => 'ama', 'MSTRG.19764' => 'ama', 'MSTRG.24111' => 'ama', 'MSTRG.25305' => 'ama', 'MSTRG.3057' => 'ama', 'MSTRG.4616' => 'ama', 'MSTRG.6289' => 'ama', 'MSTRG.9341' => 'ama', 'Nitab4.5_0000033g0040' => 'nta', 'Nitab4.5_0000099g0050' => 'nta', 'Nitab4.5_0000123g0190' => 'nta', 'Nitab4.5_0000123g0200' => 'nta', 'Nitab4.5_0000519g0110' => 'nta', 'Nitab4.5_0000837g0060' => 'nta', 'Nitab4.5_0001270g0140' => 'nta', 'Nitab4.5_0001270g0150' => 'nta', 'Nitab4.5_0001464g0050' => 'nta', 'Nitab4.5_0001728g0080' => 'nta', 'Nitab4.5_0002113g0040' => 'nta', 'Nitab4.5_0002137g0040' => 'nta', 'Nitab4.5_0002334g0120' => 'nta', 'Nitab4.5_0002577g0020' => 'nta', 'Nitab4.5_0004417g0060' => 'nta', 'Nitab4.5_0005286g0060' => 'nta', 'Nitab4.5_0005858g0110' => 'nta', 'Nitab4.5_0008461g0010' => 'nta', 'Nitab4.5_0008461g0040' => 'nta', 'Nitab4.5_0009325g0020' => 'nta', 'Nitab4.5_0010260g0010' => 'nta', 'Nitab4.5_0011312g0020' => 'nta', 'Nn1g07137' => 'nnu', 'Nn3g16216' => 'nnu', 'Nn3g16355' => 'nnu', 'Nn3g18684' => 'nnu', 'Nn4g22080' => 'nnu', 'Nn4g22212' => 'nnu', 'Nn4g24944' => 'nnu', 'Nn7g37151' => 'nnu', 'Oeu002063.1' => 'oeu', 'Oeu009511.1' => 'oeu', 'Oeu009512.1' => 'oeu', 'Oeu021018.2' => 'oeu', 'Oeu025409.1' => 'oeu', 'Oeu028506.1' => 'oeu', 'Oeu030651.1' => 'oeu', 'Oeu030747.1' => 'oeu', 'Oeu035260.1' => 'oeu', 'Oeu044227.1' => 'oeu', 'Oeu044228.2' => 'oeu', 'Oeu045566.1' => 'oeu', 'Oeu051276.1' => 'oeu', 'Oeu062524.2' => 'oeu', 'Os01g0279000' => 'osa', 'Os01g0868200' => 'osa', 'Os01g0925300' => 'osa', 'Os05g0436900' => 'osa', 'Os08g0103400' => 'osa', 'Os08g0535400' => 'osa', 'Os08g0539100' => 'osa', 'Os09g0508300' => 'osa', 'Os11g0133800' => 'osa', 'Os11g0534300' => 'osa', 'Os12g0131200' => 'osa', 'Peaxi162Scf00003g05376' => 'pax', 'Peaxi162Scf00007g00829' => 'pax', 'Peaxi162Scf00025g03227' => 'pax', 'Peaxi162Scf00079g02016' => 'pax', 'Peaxi162Scf00420g00738' => 'pax', 'Peaxi162Scf00516g00039' => 'pax', 'Peaxi162Scf00569g00536' => 'pax', 'Peaxi162Scf01064g00259' => 'pax', 'Peaxi162Scf01167g00016' => 'pax', 'PGR042G0706' => 'pgr', 'PGR102G3050' => 'pgr', 'PGR142G0154' => 'pgr', 'PGR142G3682' => 'pgr', 'PGR142G4177' => 'pgr', 'PGR142G4215' => 'pgr', 'PGSC0003DMG400002184' => 'stu', 'PGSC0003DMG400007186' => 'stu', 'PGSC0003DMG400007187' => 'stu', 'PGSC0003DMG400019702' => 'stu', 'PGSC0003DMG400020241' => 'stu', 'PGSC0003DMG400025070' => 'stu', 'PGSC0003DMG400026941' => 'stu', 'PGSC0003DMG400028962' => 'stu', 'PGSC0003DMG401004331' => 'stu', 'PGSC0003DMG402023644' => 'stu', 'Phvul.001G090700' => 'pvu', 'Phvul.001G094701' => 'pvu', 'Phvul.001G108600' => 'pvu', 'Phvul.002G283700' => 'pvu', 'Phvul.004G071400' => 'pvu', 'Phvul.004G091700' => 'pvu', 'Phvul.007G082300' => 'pvu', 'Potri.001G070100' => 'ptr', 'Potri.001G325400' => 'ptr', 'Potri.002G065500' => 'ptr', 'Potri.003G160600' => 'ptr', 'Potri.005G195300' => 'ptr', 'Potri.006G027400' => 'ptr', 'Potri.006G027500' => 'ptr', 'Potri.007G077000' => 'ptr', 'Potri.012G103300' => 'ptr', 'Potri.014G153600' => 'ptr', 'Potri.015G101900' => 'ptr', 'Potri.016G025100' => 'ptr', 'Potri.016G025200' => 'ptr', 'Potri.017G063800' => 'ptr', 'Pp3c14_14250' => 'ppa', 'Pp3c14_14940' => 'ppa', 'Pp3c17_5900' => 'ppa', 'Pp3c4_16650' => 'ppa', 'PRCOL_00000324' => 'pco', 'PRCOL_00000560' => 'pco', 'PRCOL_00000671' => 'pco', 'PRCOL_00002142' => 'pco', 'PRCOL_00004373' => 'pco', 'PRCOL_00005205' => 'pco', 'Prupe.1G212000' => 'ppe', 'Prupe.3G310300' => 'ppe', 'Prupe.5G146300' => 'ppe', 'Prupe.7G020700' => 'ppe', 'Prupe.7G022600' => 'ppe', 'Prupe.8G038400' => 'ppe', 'Psat1g097840' => 'psa', 'Psat1g100920' => 'psa', 'Psat2g002320' => 'psa', 'Psat3g082560' => 'psa', 'Psat3g082600' => 'psa', 'Psat3g095280' => 'psa', 'Psat5g053360' => 'psa', 'Psat6g191240' => 'psa', 'PSO017G0032' => 'pso', 'PSO017G0662' => 'pso', 'PSO017G1230' => 'pso', 'PSO017G5216' => 'pso', 'PSO339G5156' => 'pso', 'PSO384G0817' => 'pso', 'PSO478G0135' => 'pso', 'PSO478G2232' => 'pso', 'PSO478G2383' => 'pso', 'PSO478G3594' => 'pso', 'PSO541G0405' => 'pso', 'PSO541G5344' => 'pso', 'PSO541G5702' => 'pso', 'PSO675G2405' => 'pso', 'PSO675G7828' => 'pso', 'QL02p037574' => 'qlo', 'QL02p070542' => 'qlo', 'QL03p048434' => 'qlo', 'QL07p014616' => 'qlo', 'QL07p014657' => 'qlo', 'QL08p033030' => 'qlo', 'QL10p041270' => 'qlo', 'RcHm_v2.0_Chr2g0176141' => 'rch', 'RcHm_v2.0_Chr3g0493221' => 'rch', 'RcHm_v2.0_Chr3g0494561' => 'rch', 'RcHm_v2.0_Chr4g0428471' => 'rch', 'RcHm_v2.0_Chr6g0274491' => 'rch', 'RcHm_v2.0_Chr7g0189301' => 'rch', 'Rhsim04G0118800' => 'rsi', 'Rhsim04G0118900' => 'rsi', 'Rhsim06G0162800' => 'rsi', 'Rhsim08G0040900' => 'rsi', 'Rhsim08G0194000' => 'rsi', 'Rhsim10G0003600' => 'rsi', 'Rhsim10G0145100' => 'rsi', 'Rhsim10G0145200' => 'rsi', 'Rhsim11G0086900' => 'rsi', 'Rhsim12G0100200' => 'rsi', 'Sabra01G0049100' => 'sbr', 'Sabra02G0052200' => 'sbr', 'Sabra03G0116800' => 'sbr', 'Sabra05G0071800' => 'sbr', 'Sabra05G0148800' => 'sbr', 'Sabra06G0020100' => 'sbr', 'Sabra07G0064900' => 'sbr', 'Sabra12G0075800' => 'sbr', 'Sabra14G0116200' => 'sbr', 'Sabra15G0122100' => 'sbr', 'Sabra16G0031000' => 'sbr', 'Sabra16G0207900' => 'sbr', 'Sabra17G0057600' => 'sbr', 'SalBow1G1880' => 'sbo', 'SalBow1G5574' => 'sbo', 'SalBow1G6143' => 'sbo', 'SalBow2G3074' => 'sbo', 'SalBow4G0181' => 'sbo', 'SalBow4G0573' => 'sbo', 'SalBow4G3168' => 'sbo', 'SalBow6G2101' => 'sbo', 'SalBow6G5156' => 'sbo', 'SalBow7G1185' => 'sbo', 'SalBow7G2146' => 'sbo', 'Sc02g0003870' => 'sci', 'Sc07g0003520' => 'sci', 'Sc10g0010650' => 'sci', 'Sc13g0000770' => 'sci', 'Sc16g0004070' => 'sci', 'Sc19g0007860' => 'sci', 'Sc25g0005600' => 'sci', 'Sed0000588' => 'sed', 'Sed0003109' => 'sed', 'Sed0011477' => 'sed', 'Sed0013171' => 'sed', 'Sed0018048' => 'sed', 'Sed0020233' => 'sed', 'Sed0021030' => 'sed', 'Sed0024409' => 'sed', 'Sed0028028' => 'sed', 'SEGI_06288' => 'sgi', 'SEGI_07532' => 'sgi', 'SEGI_14030' => 'sgi', 'SEGI_14785' => 'sgi', 'SEGI_15012' => 'sgi', 'SEGI_16844' => 'sgi', 'SGA_v2.0_scaffold106G30563' => 'sas', 'SGA_v2.0_scaffold108G30871' => 'sas', 'SGA_v2.0_scaffold195G40784' => 'sas', 'SGA_v2.0_scaffold253G45171' => 'sas', 'SGA_v2.0_scaffold2G01265' => 'sas', 'SGA_v2.0_scaffold44G16937' => 'sas', 'SGA_v2.0_scaffold66G22315' => 'sas', 'SHI33984' => 'shi', 'SMO116G0044' => 'smo', 'SMO200G0128' => 'smo', 'SMO266G0023' => 'smo', 'Solyc02g094390.3' => 'sly', 'Solyc03g097630.3' => 'sly', 'Solyc04g012030.3' => 'sly', 'Solyc04g051380.1' => 'sly', 'Solyc04g071860.3' => 'sly', 'Solyc06g072610.3' => 'sly', 'Solyc07g052330.3' => 'sly', 'Solyc10g077050.2' => 'sly', 'Solyc10g077060.3' => 'sly', 'Solyc11g045670.3' => 'sly', 'Sopen02g039040' => 'spe', 'Sopen03g028380' => 'spe', 'Sopen04g006150' => 'spe', 'Sopen04g022790' => 'spe', 'Sopen04g027830' => 'spe', 'Sopen06g028960' => 'spe', 'Sopen07g025950' => 'spe', 'Sopen10g026870' => 'spe', 'Sopen10g028730' => 'spe', 'Sopen10g028740' => 'spe', 'Sopen11g017560' => 'spe', 'Sp2g16060' => 'spa', 'Sp4g23310' => 'spa', 'Sp5g05660' => 'spa', 'Sp5g05670' => 'spa', 'Sp5g13250' => 'spa', 'Sp6g11850' => 'spa', 'Sp6g37760' => 'spa', 'Sp7g00840' => 'spa', 'Sp7g22620' => 'spa', 'TAR371G0958' => 'tar', 'TAR376G0123' => 'tar', 'TAR381G0894' => 'tar', 'TAR381G1149' => 'tar', 'TAR546G0004' => 'tar', 'TAR622G1162' => 'tar', 'TAR627G0193' => 'tar', 'TAR636G3126' => 'tar', 'THA.LOC104798918' => 'tha', 'THA.LOC104799809' => 'tha', 'THA.LOC104803236' => 'tha', 'THA.LOC104803238' => 'tha', 'THA.LOC104805318' => 'tha', 'THA.LOC104821530' => 'tha', 'THA.LOC104823162' => 'tha', 'THA.LOC104824386' => 'tha', 'THA.LOC104825640' => 'tha', 'THA.LOC104826882' => 'tha', 'Thecc.01G117200' => 'tca', 'Thecc.02G188900' => 'tca', 'Thecc.02G316000' => 'tca', 'Thecc.03G135900' => 'tca', 'Thecc.04G042100' => 'tca', 'Thecc.05G115700' => 'tca', 'Thecc.05G117600' => 'tca', 'Thecc.08G157500' => 'tca', 'Thhalv10004226m.g' => 'esa', 'Thhalv10005938m.g' => 'esa', 'Thhalv10006138m.g' => 'esa', 'Thhalv10010352m.g' => 'esa', 'Thhalv10013681m.g' => 'esa', 'Thhalv10015437m.g' => 'esa', 'Thhalv10016704m.g' => 'esa', 'Thhalv10025973m.g' => 'esa', 'Thhalv10027785m.g' => 'esa', 'TPR.G13429' => 'tpr', 'TPR.G17047' => 'tpr', 'TPR.G21587' => 'tpr', 'TPR.G23198' => 'tpr', 'TPR.G23200' => 'tpr', 'TPR.G36714' => 'tpr', 'TPR.G5758' => 'tpr', 'TPR.G5762' => 'tpr', 'TPR.G9009' => 'tpr', 'TWI18G0175' => 'twi', 'TWI18G0266' => 'twi', 'TWI31G0744' => 'twi', 'TWI34G0425' => 'twi', 'TWI36G0649' => 'twi', 'TWI39G1119' => 'twi', 'TWI53G0622' => 'twi', 'TWI53G1698' => 'twi', 'TWI60G0535' => 'twi', 'TWI60G0803' => 'twi', 'TWI74G0316' => 'twi', 'TWI74G1531' => 'twi', 'TWI77G0307' => 'twi', 'unitig_0.g1254' => 'ugi', 'unitig_26.g9896' => 'ugi', 'unitig_37.g12697' => 'ugi', 'unitig_61.g26374' => 'ugi', 'unitig_62.g23370' => 'ugi', 'unitig_62.g23371' => 'ugi', 'unitig_748.g7002' => 'ugi', 'unitig_749.g14340' => 'ugi', 'unitig_82.g27118' => 'ugi', 'vmacro01484' => 'vma', 'vmacro05981' => 'vma', 'vmacro08968' => 'vma', 'vmacro08969' => 'vma', 'vmacro12200' => 'vma', 'vmacro12868' => 'vma', 'vmacro15974' => 'vma', 'vmacro18365' => 'vma', 'vmacro19150' => 'vma', 'vmacro22200' => 'vma', 'VMungo0251G1659' => 'vmu', 'VMungo0464G0695' => 'vmu', 'VMungo0464G2140' => 'vmu', 'VMungo0720G2734' => 'vmu', 'VMungo1327G0001' => 'vmu', 'VMungo1383G0505' => 'vmu', 'VMungo1383G1628' => 'vmu', 'VMungo1383G1890' => 'vmu', 'VMungo1383G2388' => 'vmu', 'Zm00001eb036890' => 'zma', 'Zm00001eb102520' => 'zma', 'Zm00001eb113570' => 'zma', 'Zm00001eb129020' => 'zma', 'Zm00001eb142820' => 'zma', 'Zm00001eb146620' => 'zma', 'Zm00001eb163510' => 'zma', 'Zm00001eb175470' => 'zma', 'Zm00001eb197970' => 'zma', 'Zm00001eb198250' => 'zma', 'Zm00001eb198830' => 'zma', 'Zm00001eb261860' => 'zma', 'Zm00001eb289180' => 'zma', 'Zm00001eb317860' => 'zma', 'Zm00001eb363950' => 'zma' ) $gf_id = 'HOM05D000571' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000571' ) $data_identifier = 'HOM05D000571' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 10, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 16, 'bra' => (int) 18, 'can' => (int) 9, 'cansat' => (int) 7, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 10, 'cde' => (int) 16, 'cfa' => (int) 8, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 9, 'dca' => (int) 9, 'din' => (int) 10, 'dzi' => (int) 17, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 26, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 9, 'sun' => (int) 8, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 15, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mco' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 14, 'ppa' => (int) 4, 'pco' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 13, 'sbo' => (int) 11, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 8, 'tha' => (int) 10, 'tca' => (int) 8, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 9, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb363950' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1